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SCD Deep Dish Pizza Recipe (Gluten-Free SCD Pizza)

This SCD Deep Dish Pizza recipe contains affiliate links which means if you purchase any of the items within the post, I will receive a small percentage of the sale at no additional cost to you.

While living in the Chicago area I got used to eating Deep Dish Pizza pretty regularly. There were so many places in our area that delivered delicious deep-dish pizza, whenever we wanted it.

Unfortunately, these kinds of places are hard to find in Iowa, and even in Chicago, it was hard to find a healthy alternative like this deep dish SCD pizza crust.

So, I have decided to swap out the ingredients to make this an SCD pizza now that I am eating healthy and when I am craving a deep dish pizza I whip up a gluten-free deep-dish pizza that is also SCD-friendly.

Gluten Free SCD Deep Dish Pizza Recipe Infographic.

What is SCD?

Diagnosed with Ulcerative Colitis, I sought alternatives to lifelong medications. Despite doctors dismissing diet’s role, I believed in its significance. Discovering the Specific Carbohydrate Diet (SCD), I explored its community, adhering to SCD legal foods and experimenting with recipes to promote healing.

When I stumbled upon the book Breaking the Vicious Cycle: Intestinal Health Through Diet by Elaine Gottschall MS, all of my questions were answered. I was able to find out why the diet was an essential part of regaining my health and why the doctors refused to link the two together.

That was when I looked at food completely differently and began recreating all of my favorite recipes to make them comply with the rules of The Specific Carbohydrate Diet.

Here you can find more SCD Recipes that I have created, to learn more about SCD, you can visit this post that shares more information on the Specific Carbohydrate Diet.

SCD Deep Dish Pizza Crust in Cast Iron Skillet

SCD Deep Dish Pizza Ingredients

Almond Flour (2 Cups): Almond flour is a gluten-free alternative to traditional wheat flour, making it suitable for those following a grain-free diet like the Specific Carbohydrate Diet (SCD). It adds a nutty flavor and a moist texture to the pizza crust.

Eggs (2): Eggs serve as a binding agent in the crust, contributing to its structure and helping it rise. They also add moisture and richness to the dough.

Parmesan Cheese (1/4 cup): Parmesan cheese brings a savory and salty flavor to the pizza crust. It also provides a touch of umami, enhancing the overall taste of the dish. Parmesan is naturally low in lactose, making it suitable for some individuals with dietary restrictions.

Baking Soda (2 Teaspoons): Baking soda acts as a leavening agent, helping the crust rise and become light and fluffy. It reacts with the acidic ingredients in the recipe, such as the Parmesan cheese.

Colby Jack Cheese (1/4 Cup): Colby Jack cheese adds a creamy and mild flavor to the pizza. It contributes to the gooey, melted cheese layer on top of the crust. While the recipe calls for a small amount, feel free to adjust the quantity based on personal preference.

Olive Oil (1 Teaspoon): Olive oil not only adds richness and flavor to the crust but also helps in achieving a tender texture. It’s a healthier alternative to some other cooking oils and complements the nutty taste of almond flour.

Medium-Sized Buttered Cast Iron Skillet: The cast iron skillet is used to create the deep-dish pizza. It helps achieve a crispy and golden crust. Buttering the skillet adds flavor and prevents sticking.

Enough Olive Oil to Drizzle Crust: Drizzling olive oil over the crust before baking enhances the flavor and contributes to a crispy exterior. It also adds a subtle richness to the finished pizza.

How to Make SCD Deep Dish Pizza Dough

Step 1 Almond Flour Pizza Crust

Start by grabbing a large mixing bowl. Add 2 cups of almond flour, 2 eggs, and 2 teaspoons of baking soda. Mix these ingredients thoroughly to form a cohesive dough.

Step 2 Flavoring the Gluten-Free Pizza Crust With Almond Flour

Now, introduce a burst of flavor and texture by incorporating 1/4 cup of Parmesan cheese, 1/4 cup of Colby Jack cheese, and 1 teaspoon of olive oil into the mixture.

almond flour mixing in bowl

Step 3 Mixing the SCD Pizza Crust Ingredients

Blend all the ingredients together with care. Ensure that the cheeses and oil are evenly distributed throughout the dough for a delicious and well-balanced crust.

Once everything is mixed, shape the dough into a ball with your hands, working it into a tight ball.

Butter a medium skillet and press dough evenly into the sides and bottom, pressing firmly to remove any air bubbles or cracks in the dough.

SCD Deep Dish Pizza Crust in Skillet

By following these steps, you’ll create a tasty base for your SCD deep-dish pizza.

SCD Pizza Sauce Ingredients

Crushed Tomatoes (12-ounce can): The base of the sauce, crushed tomatoes bring a rich, tomato flavor. Opt for a can with no added sugars for adherence to the Specific Carbohydrate Diet (SCD).

Garlic (2 Teaspoons or 1 Teaspoon Fresh Diced Garlic): Garlic adds a robust and aromatic quality to the sauce. You can choose between 2 teaspoons of pre-minced garlic or the fresh option with 1 teaspoon of diced garlic, depending on your preference.

Onion (1/4 of an onion, diced): Diced onion contributes a sweet and savory element to the sauce, enhancing its overall depth of flavor.

Oregano (1/4 Teaspoon): Oregano brings a Mediterranean flair to the sauce with its earthy and slightly bitter taste. It complements the tomato base and other herbs.

Basil (1/4 Teaspoon): Basil infuses a fresh and slightly peppery flavor, brightening up the sauce. It pairs well with tomatoes and adds a touch of sweetness.

Dash of Salt and Pepper: A dash of salt enhances the natural flavors of the ingredients, while pepper adds a subtle kick. Adjust according to your taste preferences.

Olive Oil (1 Teaspoon): Olive oil provides richness and helps meld the flavors together. It adds a smooth texture to the sauce and complements the Mediterranean-inspired herbs.

Combine these ingredients to create a flavorful SCD-friendly deep-dish pizza sauce, perfect for enhancing the taste of your pizza while adhering to the dietary principles of the Specific Carbohydrate Diet.

How to Make SCD Pizza Sauce

Enjoy a delicious SCD-friendly deep-dish pizza with this flavorful sauce that also complements other dishes like Chicken Parmesan and zucchini spaghetti with SCD meatballs.

Heat olive oil in a frying pan over high heat.

Add diced onions and cook until translucent. Introduce garlic and continue cooking for an additional 2 minutes.

Stir in crushed tomatoes, oregano, basil, salt, and pepper. Reduce heat to medium-low and simmer the sauce for about 20 minutes.

If you have a thriving garden full of tomato plants you may want to check out this recipe that shares how to make sauce from Roma tomatoes.

SCD Deep Dish Pizza Assembly

Fill the pizza crust generously with the prepared sauce.

Top it with provolone cheese and your favorite toppings—I recommend green peppers and onions but you can add whatever pizza toppings you would enjoy.

Then, drizzle the crust with a touch of olive oil before baking this low-carb deep-dish pizza recipe.

SCD Pizza Crust with Toppings

How to Cook SCD Deep Dish Pizza

Bake in a preheated oven at 425 degrees for approximately 12-15 minutes.

For a seamless removal, gently carve the outer crust from the skillet using a butter knife. When taking the pizza out, employ a spatula to slide underneath.

Reheating Almond Flour Crust Pizza Instructions

I’ve designed this recipe to be enjoyed over two days, and reheating is a breeze. Simply grease the pan again and reheat it using the same method as the initial preparation.

Keep a close eye to avoid overcooking, checking every few minutes for optimal results.

SCD Pizza Crust with SCD Pizza Sauce

Is Deep Dish Pizza Keto Friendly?

If you are following a gluten-free diet, this Deep Dish Pizza Recipe is the perfect recipe to satisfy those cravings. If you are following a Keto Diet, be sure to calculate your net carbs for the day before devouring this pizza as it can rack up the carbs pretty quickly.

It is nice to have the option to eat a Keto-Friendly Deep Dish Pizza but it isn’t exactly a zero-carb keto food so be sure to calculate your net carbs before devouring this entire pizza.

Is SCD Deep Dish Pizza Recipe Low Carb?

Yes, this deep-dish pizza will fit into a low-carb diet. Indulge in the rich flavors while staying within your dietary goals. Follow this easy-to-make recipe for a delicious and guilt-free low-carb deep-dish pizza experience!

Can You Eat Pizza with Ulcerative Colitis?

Yes! While you may think pizza and ulcerative colitis don’t mix, many people with UC and Crohns disease find that eating a gluten-free diet allows them to eat a variety of foods. While there is no guarantee a restrictive diet will help, you have nothing to lose by giving a gluten-free diet a try especially now that you know how to make this easy gluten-free deep-dish pizza recipe.

Can You Make Pizza With Almond Flour in Any Pan?

This thick-style almond flour pizza crust is made in a cast iron skillet but you can make it in a springform pan or any baking dish of your choosing. When making pizza using almond flour it is important to grease the pan and using a cast iron skillet for this gluten-free pizza helps to crisp up the almond flour crust.

Be sure to sign up for the newsletter so that you never miss another gluten-free recipe and follow along on social media. Also, I would appreciate it if you would pin this SCD Deep Dish Pizza Recipe for later or share it on Facebook and Pinterest because a recipe this good needs to be shared! 

scd pizza crust - SCD deep dish gluten-free pizza crust
Yield: 4

SCD Deep Dish Pizza

Cook Time: 20 minutes
Prep Time: 20 minutes
Total Time: 40 minutes

This SCD pizza crust is a deep dish gluten-free and low carb version of the popular Chicago-style pizza.


SCD Gluten Free Deep Dish Pizza Crust

  • 2 Cups of Almond Flour
  • 2 Eggs
  • 1/4 cup Parmesan Cheese
  • 2 Teaspoons of Baking Soda
  • 1/4 Cup of Colby Jack
  • 1 Teaspoon of Olive Oil

SCD Gluten Free Deep Dish Pizza Sauce

  • 12 ounce can of Crushed Tomatoes
  • 2 Teaspoons Garlic or 1 Teaspoon Fresh Diced Garlic
  • 1/4 of an onion, diced
  • 1/4 Teaspoon Oregano
  • 1/4 Teaspoon of Basil
  • A Dash of Salt and Pepper
  • 1 Teaspoon of Olive Oil

Pizza Toppings

  • Provolone Cheese
  • Pepperoni or Veggies to Top the Pizza


    In a Large Mixing Bowl add the 2 Cups of Almond Flour and the 2 Eggs, 2 Teaspoons of Baking Soda, and mix well.

    Then add in the 1/4 cup Parmesan Cheese, 1/4 Cup of Colby Jack, and 1 Teaspoon of Olive Oil. Mix everything until well combined.

    Once everything is mixed, shape the dough into a ball with your hands, working it into a tight ball.

    Butter a medium skillet and press dough evenly into the sides and bottom, pressing firmly to remove any air bubbles or cracks in the dough.

    For the Sauce: Add Olive oil to a frying pan and turn on high heat. Add Onions and let cook until they become translucent. Add Garlic and heat for an additional 2 minutes.

    Add the rest of the ingredients and stir. Cook on medium to low heat for about 20 minutes.


If you are making this recipe with the intention of eating half today and saving half for tomorrow, be sure to grease the pan again the next time you want to heat it up. Check the pizza frequently to avoid overcooking when reheating.

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Nutrition Information



Serving Size


Amount Per Serving Calories 535Total Fat 42gSaturated Fat 7gTrans Fat 0gUnsaturated Fat 33gCholesterol 110mgSodium 1093mgCarbohydrates 23gFiber 10gSugar 8gProtein 23g

The nutrition in recipes is caluculate by AI, mistakes happen. It is highly recommended to check carb counts to make sure these recipes fit into your diet.


About Thirty Something Super Mom

Melissa Dixon Thirty Something Super Mom
Thirty Something Super Mom | Website

My journey started after a Crohn's disease diagnosis, inspiring a commitment to well-being. This site shares my distinctive approach to healthy living with my collection of nutritious recipes that boast authentic flavors, mimicking the indulgence of traditional dishes. I love sharing guilt free recipes for low carb, keto, gluten-free, paleo, and the specific carbohydrate diet. I also share tips on natural living, including homemade cleaners and cleaning hacks. I also share my experience as a veterinary technician and pet groomer, to integrate pet health tips, homemade dog food recipes, and grooming insights to ensure your pets thrive.


Wednesday 13th of March 2019

Melissa,thank you! I love a good and easy pizza and this looks delicious. It is definitely one of my favs!


Thursday 14th of March 2019

That's awesome, I am so glad to hear it!


Monday 5th of June 2017

Made it and the flavor was there but the kids didn't like the texture. It fell apart too easily for us. But overall a really good recipe.


Monday 5th of June 2017

Sorry to hear the kids weren't crazy about the texture! IF your crust is falling apart maybe try adding more olive oil to soften the flour and make it more workable. Thanks for stopping by and leaving a comment!

Maria-Teresa Andreacchi

Thursday 21st of May 2015

This recipe looks absolutely amazing. I love Chicago deep dish style pizza, but as we all know its a killer on the calorie count... Your recipe sounds great and easy enough to do any week of the night. Great post!


Tuesday 19th of May 2015

This post is definitely being tagged for my recipe book. I love pizza that is low carb and gluten free. Pus, it looks like it tastes great! Thanks for sharing. It's going to be a pizza weekend in my house :-)

Jacqui Odell

Tuesday 19th of May 2015

This sounds amazing! It also sounds pretty easy to make. I should try it out this weekend. My daughter has been really wanting some pizza. She keeps telling me..."I smell pizza!"

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